atSNP

Search for effects of SNPs on transcription factor binding

Select a search type:

Please type SNPids of interest in the box or upload a text file containing a list of SNPids.
SNPids can be separated with commas, spaces, or newlines.
If more than 1,000 SNPids are specified, only the first 1,000 will be included in the search.

SNPids

File of SNPids

Refine your search to identify GAIN and/or LOSS of function, and to narrow down PWMs based on their degeneracy.

P-value SNP impact ^?

SNP impact type ^?

P-value Reference ^?

P-value SNP ^?

Max number of results

Specify sort order ^?

P-value SNP Impact

Genomic Coordinate

P-value SNP

P-value Reference

Filter motif degeneracy ^?

Low

Moderate

High

Very High

Please type a SNPid of interest and a window size (number of base pairs) around the SNP.
The window size is limited to 125 million bases.

SNPid

Window Size

Refine your search to identify GAIN and/or LOSS of function, and to narrow down PWMs based on their degeneracy.

P-value SNP impact ^?

SNP impact type ^?

P-value Reference ^?

P-value SNP ^?

Max number of results

Specify sort order ^?

P-value SNP Impact

Genomic Coordinate

P-value SNP

P-value Reference

Filter motif degeneracy ^?

Low

Moderate

High

Very High

Please specify a genomic region of interest by its chromosome, start and end positions (1-based).
The region size is limited to 250 million bases.

Chromosome

Start position

End position

Refine your search to identify GAIN and/or LOSS of function, and to narrow down PWMs based on their degeneracy.

P-value SNP impact ^?

SNP impact type ^?

P-value Reference ^?

P-value SNP ^?

Max number of results

Specify sort order ^?

P-value SNP Impact

Genomic Coordinate

P-value SNP

P-value Reference

Filter motif degeneracy ^?

Low

Moderate

High

Very High

Please type a gene symbol name and a window size.
The overall region considered will start this number of bases upstream of the gene's transcription start site (TSS) and end at this number of bases downstream of the gene's transcription end site (TES).
The window size is limited to 125 million bases.

Gene Name

Window Size

Refine your search to identify GAIN and/or LOSS of function, and to narrow down PWMs based on their degeneracy.

P-value SNP impact ^?

SNP impact type ^?

P-value Reference ^?

P-value SNP ^?

Max number of results

Specify sort order ^?

P-value SNP Impact

Genomic Coordinate

P-value SNP

P-value Reference

Filter motif degeneracy ^?

Low

Moderate

High

Very High

Please select a transcription factor library to use, then select a transcription factor of interest.
Information about the JASPAR and ENCODE transcription factor libraries are available here.

Transcription Factor Library

JASPAR

ENCODE

Select JASPAR Transcription Factor

Refine your search to identify GAIN and/or LOSS of function, and to narrow down PWMs based on their degeneracy.

P-value SNP impact ^?

SNP impact type ^?

P-value Reference ^?

P-value SNP ^?

Max number of results

Specify sort order ^?

P-value SNP Impact

Genomic Coordinate

P-value SNP

P-value Reference

Filter motif degeneracy ^?

Low

Moderate

High

Very High

atSNP is searching ~37 billion records, this can take seconds to minutes. Please wait.

Too Many Results for Download

Maximum Result Count

atSNP Result Download